Sequence information

Hello all,

I hope that your holiday season is off to a great start.

I finally got back the sequence information from the PCR samples. Here is the e-mail with instructions for viewing. If you want to know which sample is yours, send me an e-mail at jdeak@lakelandcc.edu and I can reveal your code #. If you just want to play with the data, have at it! I would suggest using thier "sequence server" tool so you can play with some of the informatics tools like alignments.

Happy holidays!

Joe


From: dnalcseq@cshl.edu


Joseph Deak,

Your submitted samples have been sequenced! I've placed the sequence
data at the bottom of this email. You can also view your sequence in
the data section of our web site (http://www.dnalc.org/data/mtdna/) by using this url:

http://www.dnalc.org/data/mtdna/examine_sequences.pl?src_ids=2AHVJF1wKcpMm

However, the most useful way to
access sequences is to use our brand-new tool "Sequence Server." To
use this tool, you will need access to the internet and either Netscape
4.0 (or better) or Internet Explorer 4.0 (or better).

The tool is at http://www.bioserver.org/sequences/.

After logging in to Sequence Server, you should click the "Manage Groups"
button at the top of the screen. This will open the Manage Groups window. In
this window, choose "Classes" from the popup menu on the upper-right. A new
screen will appear, and you will be able to see your class's name in the list
presented. To select your class. Click on the checkbox next to your class,
and click the OK button. This will put your class on your worksheet.

To compare sequences, you need to have more than once
sequence on the worksheet. To add a sequence, select the desired sequence
from the popup menu at the bottom of your class. Do this for as many sequences
as you want. Then, click the checkbox for each sequence you wish to
include in a comparison, then click on the "Compare" button. Sequence Server
will open a new window showing the results of your analysis.

To find related sequences in Genbank, click the right radio button for the
sequence you wish to search with, then click on the "Analyze" button. Sequence
Server will open a new window showing the results of your analysis.

You can also use sequence server to examine the sequences in our
database (by clicking the "Manage Groups" button), search GenBank for
any sequence matching a keyword (by clicking the "Search by Keyword"
button), and to type in your own sequences (by clicking the "Create
Sequence" button).

Please contact me if you have any problems.

Sincerely,
Johns, Laura
--
Johns, Laura dnalcseq@cshl.edu
Sequencing Coordinator http://www.dnalc.org/
DNA Learning Center Ph: (516) 367-5165
Cold Spring Harbor Lab Fx: (516) 367-5182

------------------------ SEQUENCES ---------------------------------
Student 01
TTCTCTGTTCTTTNNTGGGGNAGNNGATTTGGGTACCACCNNNGNATTGNCNCNCCNNNCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACNTGTAGTACATAAAAACCCAANCCNCATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCNATCAACCCTCAACTATCACACATCANCTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCATCCTTAACAGCACATAGNNNATAAAGCCATTTACCGTACNTNGCACATNNNAGNCNAATCCCTNCTNGNCGATGACCCAGANAGGGGTCCCTTGACCACNNNNATNNNCANStudent 02
TGTTCTTTCNTGGGNAAGNAGATTTGGGTACCACNCNAAGTATTGACTCANCNNTCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCATCCNCANStudent 03
TCTCTGTTCTTTCNTGGGGAANNAGANTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACAGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGCCGGGCANATATGNNNNANCTCCANANANNTTAGNNTCNNNCTNNNNAAACNTGATNCNTTGStudent 04
TNTTCTCTGTTCTTTCATGGGGNANNAGATTTGGGTNCCACCCAAGTATTGACTCACCNNTCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACATNNNCGGTAAGGCTTCTGACATCTCCTCTTGNTTTGNAGNGGNCATAGNGNAGAGTGGCATGGACATTATGCAGTATGGANNAGCTCCCATATGGNGTCAGATAGCTTTGGCTTTGAAATTTGTCTCTGCCTCTTACTTTGTAGACCTGTTTAGGTCCCTTGACCACNANCNATCCNCStudent 05
GTGGTNCANATNACCTCNNNNTNNTNNNNAGANNGANATNANCCTTNNNNTNTCACANATNNNNTGNNACTCNANAGCCCCCCCTCNCCGATACCAANANACCTACCCNTCNTTNANANTNNATAGNANANANNGNTNTTTNCNGNAANATTNNANNNAACTCCNCCCCNNNGCNCGGAAAANAANStudent 06
CTGTTCNTTNNTGGGGAANCAGANTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCATCTTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACATCCTCANStudent 07
ANNNATTCTCTGTTCTTTCNTGGGGAANNAGATTTGGGTACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCCCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGCACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACNATCGNNNGNNNNCNGGNTCTGNANTNNAANNCCCNNANAGTGNNATGGANATNATGCAGTATGNAGNAGCTCCCATATGNNGNNCAGATAGCTTTGGCTTTGANATTTGTTTCTGCCTCTTACTTTGTAGACCTGNNTAGGTCCCTTGACCACCACCATCCCTCNNNCNTCTNAGNNGNNCNNANTNACNANAGGGCAGTNNCATNTCTNATNNCTTCNGNAANTGCTNNCNCAATTAGAATNNNNCTTNTCTGNCCNTTGACCANCACCATCNTNAStudent 08
TNTTCTCTGTTCTTTCNTGGGGAAGNAGATTTGGGTACCACCCAAGTATTGACTCACCCNTCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCTCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGTCACCCCTCACCCATTAGGATACCAACAAACCTACTCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACNNCANStudent 09
TNNNTNTTCTCTGTTCTTTNATGGGGNAGNNGATTTGGGTACCACCCAAGTATTGACTCNCCCNTCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCATCTTTAACAGCACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCNCAAStudent 10
TCTCTGTTCTTTCNTGGGGNANNNGNNTTGGGTNCNACCCAAGTATTGACAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCNCNATNNNCAATNGCNTNNNGGNNNNCATNGNNNANANNGAAATGNNNAANNTTNNNGNCNNNTANNTTNANNNTTNGNNTCNNNCTCTNNNCNACCATGNCCCCNNGCNNNTTTTGGCACTANNNNTGTNNNNGNTNACCCATTANATTTCNNNATNNNNATStudent 11
TTCTCTGTTCTTTNNTGGGGNANNNGATTTGGGTNCCACCCAAGTATTGACTTACCCATCAACAACCGCTATGTACTTCGTACATTACTGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCANNNCATCCGTNGNNNNGNGNGATNNGNNNGNANNTTNTNNNNGTATCNNNNTATAGGTTGNTTCTCNNTANTNNStudent 12
CTCTGTTCTTTCNNGANTTGGGTNCCACCCAAGTATTGACTCACAACAACCGCTATGTATTTCGTACATTACTGCCAGCNACCATGAATATTGTACGGNACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACCCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGCACATAGCACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACCNCCATCCTCNNStudent 13
TTGCCCTGNNTNNCCTGCNNNNCCNNNNANNNNGCNCNGNANNATCTNNNGGNAAANAAAAACCNNATCNNNATNANNNCCCCNTCNNTATGNNNACNAGCNAGTNCAGCCATCAACCNTCAACTATNANANATNAACTGCANNTNCNAAGCCACCCCTNANCCACTAGGATACCAACAAACCTACCCACCCTTAACAGTACANAGNANATAANGNCATTTACCGTANATAGCANATNACAGCCCTTCTCGTCCCCATGGATGANCNNNCTNAGANNGGNGTCCCTNGANNAATCCTCANStudent 14
TTTNGGNNNCCNCCCAAGTATTGACTAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCCCATGCTTACAAGCAAGCACAGCAATCAACCTTCAACTATCACACATCAACTGCAACTCCAAAACCACCCCTCACCCACTAGGATACCAACAAACCTACCTACCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCACNNCCATCCTCANStudent 15
TNNNCTNTTCTCTGTTCTTTCNTGGGGAAGCAGATTTGGGTACCACCCAAGTATTGANTCAACAACCGCTATGTATTTCGTACATTACTGCCAGCCACCATGAATATTGTACGGTACCATAAATACTTGACCACCTGTAGTACATAAAAACCCAATCCACATCAAAACCCCCTCCTCATGCTTACAAGCAAGTACAGCAATCAACCCTCAACTATCACACATCAACTGCAACTCCAAAGCCACTCCTCACCCACTAGGATACCAACAAACCTACCCACCCTTAACAGCACATAGTACATAAAGCCATTTACCGTACATAGCACATTACAGTCAAATCCCTTCTCGTCCCCATGGATGACCCCCCTCAGATAGGGGTCCCTTGACCANCNNNNATCNNNAAN